Recently Evolved Region of the “Dark Genome” Offers Clues to Treatment of Schizophrenia and Bipolar Disorder

  • Genes code for proteins — the building blocks of life. The current definition of a gene only accounts for around 1.5% of our entire DNA
  • Very little is known about the function of regions of DNA outside our genes — termed the ‘dark genome’
  • A Cambridge-led team recently discovered that proteins are produced by over 248,000 regions of the ‘dark genome’, and are disrupted in multiple diseases
  • Now they have discovered new proteins arising from recently evolved regions of the ‘dark genome’, which could be targeted in the diagnosis and treatment of schizophrenia and bipolar disorder

Scientists investigating the DNA outside our genes — the ‘dark genome’ — have discovered recently evolved regions that code for proteins associated with schizophrenia and bipolar disorder.

They say these new proteins can be used as biological indicators to distinguish between the two conditions, and to identify patients more prone to psychosis or suicide.

Schizophrenia and bipolar disorder are debilitating mental disorders that are hard to diagnose and treat. Despite being amongst the most heritable mental health disorders, very few clues to their cause have been found in the sections of our DNA known as genes.

The scientists think that hotspots in the ‘dark genome’ associated with the disorders may have evolved because they have beneficial functions in human development, but their disruption by environmental factors leads to susceptibility to, or development of, schizophrenia or bipolar disorder.

The results are published today (December 23, 2021) in the journal Molecular Psychiatry.

“By scanning through the entire genome we’ve found regions, not classed as genes in the traditional sense, which create proteins that appear to be associated with schizophrenia and bipolar disorder,” said Dr Sudhakaran Prabakaran, who was based in the University of Cambridge’s Department of Genetics when he conducted the research, and is senior author of the report.

He added: “This opens up huge potential for new druggable targets. It’s really exciting because nobody has ever looked beyond the genes for clues to understanding and treating these conditions before.”

The researchers think that these genomic components of schizophrenia and bipolar disorder are specific to humans — the newly discovered regions are not found in the genomes of other vertebrates. It is likely that the regions evolved quickly in humans as our cognitive abilities developed, but they are easily disrupted — resulting in the two conditions.

“The traditional definition of a gene is too conservative, and it has diverted scientists away from exploring the function of the rest of the genome,” said Chaitanya Erady, a researcher in the University of Cambridge’s Department of Genetics and first author of the study.

She added: “When we look outside the regions of DNA classed as genes, we see that the entire human genome has the ability to make proteins, not just the genes. We’ve found new proteins that are involved in biological processes and are dysfunctional in disorders like schizophrenia and bipolar disorder.”

The majority of currently available drugs are designed to target proteins coded by genes. The new finding helps to explain why schizophrenia and bipolar disorder are heritable conditions, and could provide new targets for future treatments.

Schizophrenia is a severe, long-term mental health condition that may result in hallucinations, delusions, and disordered thinking and behavior, while bipolar disorder causes extreme mood swings ranging from mania to depression. The symptoms sometimes make the two disorders difficult to tell apart.

Prabakaran left his University position earlier this year to create the company NonExomics, in order to commercialize this and other discoveries. Cambridge Enterprise, the commercialization arm of the University of Cambridge, has assisted NonExomics by licensing the intellectual property. Prabakaran has raised seed funding to develop new therapeutics that will target the proteins implicated in schizophrenia and bipolar disorder, and other diseases.

His team has now discovered 248,000 regions of DNA outside of the regions conventionally defined as genes, which code for new proteins that are disrupted in disease.

Reference: “Novel open reading frames in human accelerated regions and transposable elements reveal new leads to understand schizophrenia and bipolar disorder” by Chaitanya Erady, Krishna Amin, Temiloluwa O. A. E. Onilogbo, Jakub Tomasik, Rebekah Jukes-Jones, Yagnesh Umrania, Sabine Bahn and Sudhakaran Prabakaran, 23 December 2021, Molecular Psychiatry.
DOI: 10.1038/s41380-021-01405-6

DNAMental HealthPsychiatrySchizophreniaUniversity of Cambridge
Comments ( 2 )
Add Comment
  • Alan

    Unlike the bullet points that state:

    “proteins are produced by over 248,000 regions of the ‘dark genome’”

    the actual paper states:

    “21 nORFs from our curated list of 248,135 nORFs were identified as translated”

    So it is more like 21 potentially new proteins as opposed to 248,135. Only off by 248,114 or so.

  • JustAWriter

    Why are you using the term “Dark Genome” when it isn’t anywhere in the reference article?