Yale researchers have identified a key role for the VPS13C protein in lipid transport, with its deficiency linked to neuroinflammation in Parkinson’s disease.
Although the development of Parkinson’s disease has been closely linked to variants of at least 20 different genes, scientists are still investigating exactly how they cause the severe and incurable motor disorder that afflicts around 1 million people in the U.S. alone.
Yale researchers have just completed new studies that offer important clues. In two new research papers, scientists provide insight into the function of a protein called VPS13C, one of the molecular suspects underlying Parkinson’s, a disease marked by uncontrollable movements including tremors, stiffness, and loss of balance.
“There are many roads to Rome; likewise there are many roads leading to Parkinson’s,” said Pietro De Camilli, the John Klingenstein Professor of Neuroscience and professor of cell biology at Yale and investigator for the Howard Hughes Medical Institute. “Laboratories at Yale are making progress toward elucidating some of these paths.”
De Camilli is the senior author of the two new papers, which have been published in the Journal of Cell Biology and Proceedings of the National Academy of Science (PNAS).
VPS13C’s Role in Cellular Function
Previous research has shown that mutations of the gene VPS13C cause rare cases of inherited Parkinson’s or an increased risk of the disease. To better understand why, De Camilli and Karin Reinisch, the David W. Wallace Professor of Cell Biology and of Molecular Biophysics and Biochemistry, investigated the mechanisms by which these mutations lead to dysfunction on a cellular level.
They reported in 2018 that VPS13C forms a bridge between two subcellular organelles — the endoplasmic reticulum and the lysosome. The endoplasmic reticulum is the organelle that regulates the synthesis of most phospholipids, fatty molecules that are essential for building cell membranes. The lysosome acts as the cell’s digestive system. They also showed that VPS13C can transport lipids, suggesting that it may form a conduit for the traffic of lipid between these two organelles.
The Impact of VPS13C Deficiency on Lipid Transport
One of the new papers (Journal of Cell Biology) from De Camilli’s lab demonstrates that the lack of VPS13C affects the lipid composition and properties of lysosomes. Moreover, they found that in a human cell line these perturbations activate an innate immunity. Such activation, if occurring in brain tissue, would trigger neuroinflammation, a process implicated in Parkinson’s by several recent studies.
Cryo-Electron Tomography Unveils Protein Structure
The second paper (Proceedings of the National Academy of Science) from De Camilli’s lab uses state-of-the-art cryo-electron tomography techniques to reveal the architecture of this protein in its native environment supporting a bridge model of lipid transport. Jun Liu, a professor of microbial pathogenesis at Yale, is co-corresponding author of this study.
Understanding these fine-grained molecular details will be crucial in understanding at least one of the roads that lead to Parkinson’s disease and may help identify therapeutic targets to prevent, or slow, the disease, researchers say.
References:
“ER-lysosome lipid transfer protein VPS13C/PARK23 prevents aberrant mtDNA-dependent STING signaling” by William Hancock-Cerutti, Zheng Wu, Peng Xu, Narayana Yadavalli, Marianna Leonzino, Arun Kumar Tharkeshwar, Shawn M. Ferguson, Gerald S. Shadel and Pietro De Camilli, 3 June 2022, Journal of Cell Biology.
DOI: 10.1083/jcb.202106046
“In situ architecture of the lipid transport protein VPS13C at ER–lysosome membrane contacts” by Shujun Cai, Yumei Wu, Andrés Guillén-Samander, William Hancock-Cerutti, Jun Liu and Pietro De Camilli, 13 July 2022, Proceedings of the National Academy of Science.
DOI: 10.1073/pnas.2203769119
Yale’s William Hancock-Cerutti is lead author of the paper appearing in the Journal of Cell biology and Shujun Cai is lead author of the paper published in PNAS.
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