Faster 3D Biomedical Imaging With Compressive Sensing Two-Photon Microscopy

CAD Model

Researchers have developed a system that increases the imaging speed of two-photon microscopy up to three to five times without compromising resolution. On the left is a CAD model of the compact, custom-built, two-photon microscopy system. The free-space optics inside are pictured on the right. Credit: The Chinese University of Hong Kong

By combining a compressive sensing algorithm with a digital holographic microscope, Professor Shih-Chi CHEN of the Department of Mechanical and Automation Engineering, Faculty of Engineering, The Chinese University of Hong Kong (CUHK) and his research team have developed a high-speed imaging method. The new approach is able to produce two-photon microscopy images of a 3D sample in one second, which is at a speed three to five times that of the conventional point-scanning method. The research result has been published in the journal Optics Letters recently.

Activities of neurons are generally completed on a time scale of 10 milliseconds, which makes it hard for conventional microscopes to observe these phenomena directly. This new compressive sensing two-photon microscopy can be applied to 3D imaging of the nerve distribution of living things or to monitoring activities from hundreds of neurons simultaneously.

New multi-focus laser scanning method to break the scanning speed limit of two-photon microscope

Two-photon microscopy works by delivering ultrafast pulses of infrared laser light to the sample, where it interacts with fluorescent labels to create an image. It is extensively used for biological researches because of its ability to produce high-resolution 3D images up to a depth of one millimeter in living tissue. These advantages, however, come with a limited imaging speed of the two-photon microscopy because of the weak fluorescent signal.

Two-Photon Microscopy Images

The researchers prepared two-photon microscopy images of a pollen grain by using (a) traditional point-scanning and (b) the new compressive imaging approach. The point-scanning imaging time was 2.2 seconds while the compressive imaging time required only 0.55 seconds. Credit: The Chinese University of Hong Kong

To speed up scanning, the research team developed a multi-focus laser illumination method that uses a digital micromirror device (DMD). The research solves the problem of conventional DMD being unusable to work with ultrafast laser, enabling them to be integrated and used in beam shaping, pulse shaping, and two-photon imaging.

The DMD generates 30 points of focused laser light on randomly selected locations within a specimen. The position and intensity of each point of light are controlled by a binary hologram that is projected onto the device. During each measurement, the DMD reflashes the hologram to change the position of each focus and records the intensity of the two-photon fluorescence with a single-pixel detector. Although, in many ways, the DMD multi-focus scanning is more flexible and faster than traditional mechanical scanning, the speed is still limited by the DMD’s refresh rate.

Combining the compressive sensing algorithm to further improve the imaging speed

The researchers further increased the imaging speed in this research by combining multi-focus scanning with compressive sensing. This approach enables image acquisition with fewer measurements. This is because it carries out image measurement and compression in a single step and then uses an algorithm to rebuild the images from the measurement results. For two-photon microscopy, it can reduce the number of measurements by between 70% and 90%.

Shih-Chi CHEN, Chinese University of Hong Kong

This is professor Shih-Chi CHEN (1st from right, front row) and his research team. Credit: The Chinese University of Hong Kong

After conducting a simulation experiment to demonstrate the new method’s performance and parameters, the researchers tested it with two-photon imaging experiments. These experiments demonstrated the technique’s ability to produce high-quality 3D images with high imaging speeds from any field of view. For example, they were able to acquire 3D images from a pollen grain, in just 0.55 seconds. The same images acquired with traditional point scanning took 2.2 seconds.

Professor Shih-Chi Chen said, “This method achieved a three to five times enhancement in imaging speed without sacrificing the resolution. We believe this novel approach will lead to new discoveries in biology and medicine, such as optogenetics. The team is now working to further improve the speed of the reconstruction algorithm and image quality. We also plan to use the DMD together with other advanced imaging techniques, which allows imaging in deeper tissues.”

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Reference: “Compressive sensing for fast 3-D and random-access two-photon microscopy” by Chenyang Wen, Mindan Ren, Fu Feng, Wang Chen and Shih-Chi Chen, Optics Letters, Vol. 44, Issue 17, pp. 4343-4346 (2019).
DOI: 10.1364/OL.44.004343

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