Scientists at the SLAC National Accelerator Laboratory are using X-ray lasers to determine the structures of biological molecules that are important for human health, solving the first new biological structure with a free-electron laser.
An international group of scientists working at the Department of Energy’s (DOE) SLAC National Accelerator Laboratory has mapped a weak spot in the parasite that causes African sleeping sickness, pinpointing a promising new target for treating a disease that kills tens of thousands of people each year.
The results, reported in Science Express, are already being enlisted in the effort to combat the disease, which is transmitted by tsetse flies infected with the single-celled parasite. The study also marks a milestone in using X-ray lasers, such as SLAC’s Linac Coherent Light Source (LCLS), to determine the structures of biological molecules that are important for human health.
“This is the first new biological structure solved with a free-electron laser,” said Henry Chapman of the Center for Free-Electron Laser Science in Hamburg, Germany, one of the leaders of the research team.
Lars Redecke, another team leader, said, “This is really a landmark in structural biology, and a significant step toward developing a new drug.” Redecke is a structural biologist at the Joint Laboratory for Structural Biology of Infection and Inflammation of Hamburg and Lübeck universities in Germany.
About 60 million people across Africa are at risk for contracting African sleeping sickness, which kills an estimated 30,000 people each year. Existing drug treatments can be painful and cause serious side effects, and the parasites are becoming increasingly drug-resistant.
One of the parasite’s main weapons is an enzyme that breaks down the proteins of its victims. Scientists hope to stop the disease by mimicking a natural “inhibitor” that keeps the enzyme in check until the parasite invades its victim’s bloodstream. But the parasite’s enzyme is so similar to one in humans that blocking it could also harm the patient, and researchers needed more detailed information about its structure to design a drug that attacks only the parasite.
Two recent developments allowed them to overcome this problem: a new way to grow crystals of the enzyme for analysis and the ability to analyze those tiny crystals with the LCLS X-ray laser, whose pulses are so intense and fast that they capture structural information before a sample is damaged.
The researchers grew the crystals inside live insect cells, freezing the enzyme in its natural inhibited state. Then they streamed the crystals into the laser’s path, producing patterns in a detector that were used to reconstruct the enzyme and its inhibitor in 3-D and at nearly atomic scale.
“In my opinion, we provided the most complete blueprint available so far for the development of a synthetic inhibitor to block this enzyme,” Redecke said. “Whether it will be successful is hard to say, but the odds are significantly increased by this structural data.”
Redecke said his research team is working to crystallize proteins relevant to other parasites and viruses, including strains of hepatitis and flu, that could also be studied at LCLS, and he expects this field of research to grow.
“Our study will encourage others to use free-electron lasers to obtain new structural information of biologically relevant molecules,” Redecke said.
Reference: “Natively Inhibited Trypanosoma brucei Cathepsin B Structure Determined by Using an X-ray Laser” by Lars Redecke, Karol Nass, Daniel P. DePonte, Thomas A. White, Dirk Rehders, Anton Barty, Francesco Stellato, Mengning Liang, Thomas R.M. Barends, Sébastien Boutet, Garth J. Williams, Marc Messerschmidt, M. Marvin Seibert, Andrew Aquila, David Arnlund, Sasa Bajt, Torsten Barth, Michael J. Bogan, Carl Caleman, Tzu-Chiao Chao, R. Bruce Doak, Holger Fleckenstein, Matthias Frank, Raimund Fromme, Lorenzo Galli, Ingo Grotjohann, Mark S. Hunter, Linda C. Johansson, Stephan Kassemeyer, Gergely Katona, Richard A. Kirian, Rudolf Koopmann, Chris Kupitz, Lukas Lomb, Andrew V. Martin, Stefan Mogk, Richard Neutze, Robert L. Shoeman, Jan Steinbrener, Nicusor Timneanu, Dingjie Wang, Uwe Weierstall, Nadia A. Zatsepin, John C. H. Spence, Petra Fromme, Ilme Schlichting, Michael Duszenko, Christian Betzel and Henry N. Chapman, 29 November 2012, Science.
In addition to scientists at SLAC’s LCLS and the Stanford PULSE Institute, the team included researchers from Hamburg, Lübeck and Tübingen universities, the German Electron Synchrotron (DESY) and Max Planck Institute for Medical Research in Germany; Gothenburg and Uppsala universities in Sweden; Arizona State University; and Lawrence Livermore National Laboratory. The study was performed using the Coherent X-ray Imaging (CXI) instrument at LCLS. LCLS is supported by the DOE Office of Science.