The “Fantastic Giant Tortoise” – Believed To Be Extinct – Has Been Found Alive

Fernanda Giant Tortoise

Fernanda, the only known living Fernandina giant tortoise (Chelonoidis phantasticus, or “fantastic giant tortoise”), now lives at the Galápagos National Park’s Giant Tortoise Breeding Center on Santa Cruz Island. Credit: The Galápagos Conservancy

Stephen Gaughran, a geneticist at Princeton University, has verified that “Fernanda” is related to a tortoise that was taken from Fernandina Island more than a century ago and that both of them are genetically distinct from all other Galápagos tortoises.

A tortoise from a Galápagos species that was long thought to be extinct has been discovered alive. The tortoise is the first of her kind to be discovered in more than a century and has been given the name Fernanda after her home on Fernandina Island.

A single specimen of the Fernandina Island Galápagos giant tortoise (Chelonoidis phantasticus, or “fantastic giant tortoise”) was discovered in 1906. The chance to ascertain if the species is still alive came with the discovery of a female tortoise on Fernandina Island in 2019.

Stephen Gaughran from Princeton University demonstrated that the two known Fernandina tortoises are members of the same species and genetically distinct from all other members by sequencing the genomes of both the living individual and the museum specimen and comparing them to the other 13 species of Galápagos giant tortoises. He co-authored a recent paper in the journal Communications Biology that established the survival of her species.

“For many years it was thought that the original specimen collected in 1906 had been transplanted to the island, as it was the only one of its kind,” said Peter Grant, Princeton’s Class of 1877 Professor of Zoology, Emeritus and an emeritus professor of ecology and evolutionary biology who has spent more than 40 years studying evolution in the Galápagos islands. “It now seems to be one of a very few that were alive a century ago.”

Fernanda Giant Tortoise Walking

Fernanda, named after her Fernandina Island home, is the first of her species identified in more than a century. Princeton geneticist Stephen Gaughran successfully extracted DNA from a specimen collected from the same island more than a century ago and confirmed that Fernanda and the museum specimen are members of the same species and genetically distinct from all other Galápagos tortoises. Credit: The Galápagos Conservancy

Many ecologists questioned if Fernanda was really a native phantasticus tortoise when she was first found. She lacked the male historical specimen’s notable saddleback flare, but experts theorized that she may have had deformed features due to her clearly stunted development. Even though they can’t swim, tortoises can be transported from one Galápagos island to another during hurricanes and other strong storms because they can float. The tortoises have also been transported across islands by seafarers, according to historical records.

“Like many people, my initial suspicion was that this was not a native tortoise of Fernandina Island,” said Gaughran, a postdoctoral research fellow in ecology and evolutionary biology at Princeton.

To determine Fernanda’s species definitively, Gaughran sequenced her complete genome and compared it to the genome he was able to recover from the specimen collected in 1906. He also compared those two genomes to samples from the other 13 species of Galápagos tortoises — three individuals from each of the 12 living species, and one individual of the extinct C. abingdonii.

“We saw — honestly, to my surprise — that Fernanda was very similar to the one that they found on that island more than 100 years ago, and both of those were very different from all of the other islands’ tortoises,” said Gaughran, who conducted the analyses after arriving at the University in February 2021.

In 2019, he was in the lab of Adalgisa Caccone at Yale University, the senior author of the paper. “The finding of one alive specimen gives hope and also opens up new questions, as many mysteries still remain,” said Caccone. “Are there more tortoises on Fernandina that can be brought back into captivity to start a breeding program? How did tortoises colonize Fernandina, and what is their evolutionary relationship to the other giant Galápagos tortoises? This also shows the importance of using museum collections to understand the past.”

“Part of my postdoc is developing a tool that analyzes DNA from ancient museum specimens so we can compare them to modern samples,” Gaughran said.

His tool is flexible enough to work on almost any ancient specimen. “The software doesn’t care if it’s a seal or a tortoise or human or Neanderthal,” he said. “Genetics is genetics, for the most part. It’s in the interpretation where it matters what kind of creature the DNA comes from.”

Fantastic Giant Tortoise

The Fernandina Island Galápagos giant tortoise (Chelonoidis phantasticus, or “fantastic giant tortoise”) was known only from this single specimen, collected in 1906, before “Fernanda” was found in 2019. Credit: California Academy of Sciences

At Princeton, Gaughran works with Andrea Graham and Bridgett vonHoldt to unravel the mysteries of pinniped (seal and walrus) evolution.

“Stephen solves conservation mysteries, in species ranging from tortoises to pinnipeds, with the deft and careful application of genetic and bioinformatic tools,” said Graham, a professor of ecology and evolutionary biology.

“He has such a curiosity for discovering the messages and codes tucked away in ancient remains,” said vonHoldt, an associate professor of ecology and evolutionary biology. “Stephen has been collecting specimens from several hundred years old to a few thousand, and these really hold the keys for understanding the history of when and how genomes changed over time. It is not surprising to me that he also led the effort to unravel the mystery of Fernanda, the fantastic ghost tortoise that has been rediscovered through molecular research. What a cool discovery!”

A long-standing mystery

Since 1906, scant but compelling evidence has hinted that giant tortoises might still live on Fernandina Island, an active volcano on the western edge of the Galápagos Archipelago that is reputed to be the largest pristine island on Earth.

A single specimen of C. phantasticus — “the fantastic giant tortoise” — was collected by explorer Rollo Beck during a 1906 expedition. The “fantastic” nature refers to the extraordinary shape of the males’ shells, which have extreme flaring along the outer edge and conspicuous saddlebacking at the front. Saddlebacking is unique to Galápagos tortoises, and the phantasticus tortoise shows it more prominently than the other species.

Since its 1906 discovery, the survival of the Fernandina tortoise has remained an open question for biologists. In 1964, 18 scats attributable to tortoises were reported on the western slopes of the island. Scats and a possible visual observation from an aircraft were reported during the early 2000s, and another possible tortoise scat was seen in 2014.

The island has remained largely unexplored, due to extensive lava fields blocking access to the island’s interior.

“Fernandina is the highest of the Galápagos islands, geologically young, and is mainly a huge pile of jagged blocks of brown lava; Rosemary and I once climbed to the top,” said Grant, referring to his wife and research partner Rosemary Grant, an emeritus senior research biologist at Princeton. “At lower elevations, the vegetation occurs in island-like clumps in a sea of recently congealed lava. Fernanda was found in one of these, and there is evidence that a few relatives may exist in others.”

Scientists estimate that Fernanda is well over 50 years old, but she is small, possibly because the limited vegetation stunted her growth. Encouragingly, recent tracks and scat of at least 2 or 3 other tortoises were found during other recent expeditions on the island.

Tortoises of the Galápagos

Two or three million years ago, a storm carried one or more giant tortoises from the South American mainland westwards. Because they don’t swim, the tortoises bred only with others on their own islands, resulting in rapid evolution — following the pattern of the better-known Galápagos finches. Today, there are 14 different species of giant Galápagos tortoises, all descended from a single ancestor.

(Some scientists debate whether these should be considered species or subspecies, but the Princeton-Yale team concluded that they are different enough, with thousands of distinctive genetic markers, to be separate species.)

Diversification of Galápagos tortoises reveals a continuum of shell shapes, with the easternmost islands showing rounder, domed shells, and the westernmost island — Fernandina — showing the most dramatic saddlebacking. The domed tortoises live in more humid, higher elevation ecosystems, while their saddlebacked cousins inhabit drier, lower elevation environments. All 14 are listed on the IUCN Red List as either vulnerable, endangered, critically endangered, or extinct.

The tortoise populations were decimated by European seafarers who hunted them for food, having discovered that they could keep tortoises alive on their ships with minimal effort, as the reptiles could survive with little food or water. “They were a great source of fresh meat for the sailors, but it meant that many of the species were severely overhunted,” said Gaughran. “And because they have such a long generation time, the populations have a hard time recovering quickly.”

“The genetic work provides intriguing hints of a mixing of genes with members of another population,” said Grant. “It would be fascinating if confirmed by future detective work on the genome. Another thought-provoking finding is the nearest relatives are not on the nearest very large island (Isabela) but on another (Española) far away on the other side of Isabela. The question of how the ancestors reached Fernandina is left hanging.”

Fernanda is now at the Galápagos National Park Tortoise Center, a rescue and breeding facility, where experts are seeing what they can do to keep her species alive.

“The discovery informs us about rare species that may persist in isolated places for a long time,” said Grant. “This information is important for conservation. It spurs biologists to search harder for the last few individuals of a population to bring them back from the brink of extinction.”

Reference: “The Galapagos giant tortoise Chelonoidis phantasticus is not extinct” by Evelyn L. Jensen, Stephen J. Gaughran, Nicole A. Fusco, Nikos Poulakakis, Washington Tapia, Christian Sevilla, Jeffreys Málaga, Carol Mariani, James P. Gibbs and Adalgisa Caccone, 9 June 2022, Communications Biology.
DOI: 10.1038/s42003-022-03483-w

The study was funded by the Galápagos National Park Directorate, the Galápagos Conservancy, the Mohamed bin Zayed Species Conservation Fund, Re:Wild, Island Conservation, the Ecuadorian Ministry of the Environment, the U.S. Fish and Wildlife Service, the California Academy of Sciences, and the Yale Center for Research Computing.

29 Comments on "The “Fantastic Giant Tortoise” – Believed To Be Extinct – Has Been Found Alive"

  1. Wow! What a find..
    I guess that we’ll have to redefine “settled science”…
    Pretty much the way “scien-tists” have redefined ‘climate change’

    • Tell me that you are a moron without telling me that you are a moron.

      • It seems quite clear that you’re afraid of different opinions.

        • And why are the shelves filled with turtles and some of them wrapped up in plastic. Hence the reason why so many species are extinct. For god’s sake just leave all of the animals alone, leave nature where they belong

  2. “Today, there are 14 different species of giant Galápagos tortoises, all descended from a single ancestor.”

    The unstated assumption is that there was a single instance of a tortoise being transported from the mainland to the islands over the last 3 million years. What are the odds that it only happened once? The fact that the genetics of phantasticus are different from the other (sub)species suggests that it happened at least twice.

    • I agree. Unless the genetic testing converges to a single ancestral group 3 million years ago, it’s way more plausible to assume that multiple “unintended migrations” from the mainland have happened. After all, 3 million years is enough time for 30,000 “storms of the century”.

  3. Well I think we’d have to say there were at least two tortoises transported to the islands, otherwise there wouldn’t be any anymore!

  4. Wouldnt it be better to leave her there where she might find a mate? They might be better at finding each other than we are.

  5. If you look at the picture where they show their stuffed tortoises there’s a whole mess of them they killed them all not sailors the scientist did look how many is on that shelf when you’re out there exploring and you find a new species plant or animal and you bring it back you might be killing that species off

  6. One day out of the rubble held by only an ankle 400 yrs in the future a Scientist will proclaim, look humans my be dumb as dirt but some how they still exist.

  7. Not necessary that two tortoises float into any island at the same time, since any individual might be carrying fertilized eggs.

  8. It feels like such a dumb idea to take her out of the wild when clearly there is a higher likelihood of there being a small breeding population there and we haven’t found another one for 100 years, what makes them think they will find a male in the next fifty years. Better off leaving her in the wild you probably just extinguished all hope of a continued species or recovery by removing her from her habitat and possibly removed the last breeding female left. Your “keep it in captivity and search for a mate” approach failed for lonesome George and it will fail for this poor thing too. Sometimes scientists really need to learn to leave nature to do its thing and stop interfering.

    • Afnnerdandnobodylikesme | August 25, 2022 at 11:38 pm | Reply

      Actually there was a documentary series on finding extinct animals on animal planet. This particular tortoise was not in good health when they found her. A female tortoise can hold male sperm for up to 4 years before laying eggs. The hope is that she is already bred and just needed to get her health up before laying a clutch of eggs that are fertilized. It’s actually very interesting. And the island the tortoise was found on had an active volcano. That is why they were concerned that the species died out due to humans hunting /eating them and the environment on the island. From the way it seemed on the show they had just started searching that day for the tortoise and happened upon her. So hopefully since it didn’t take long to find her, maybe there will be a mate out there they can find before the volcano erupts again.

  9. Laurel Johannesberg | August 25, 2022 at 8:20 pm | Reply

    Single pregnant female, lost in a stormy sea, washed ashore to populate an entirely new habitat on her own. Easy enough to comprehend.

  10. Why do /did Europeans destroy everything in their path? Why can’t they let entities around them thrive without looking for their own fulfillment? Why take it to such levels where decimation is the only outcome? Greed. Y you so greedy?

    • Just as native Americans destroyed one another before the European’s ever sailed the ocean. Heman nature I suppose.

  11. It’s time to understand the world around you. A world awaits you….
    It’s time.

  12. If people could compromise with with each other and nature what a better place we would live in. Hope someday in the near future we can achieve harmony and peace with our surroundings in nature and STOP JUST taking from nature and using it for our own selfishness.

  13. I’m pretty sure I stumbled upon some giant tortoises in 1978 just west of 29 Palms California. Remote area with hi fences around what appeared to be an oasis. The tall cacti had triangular ‘bites’ out of them, and the place smelled like a dirty terrapin bowl. Within 2 miles of KDES radio tower.

  14. Now you found one and when it die you will prove it to be extinct.

  15. I want to go see them myself. Can anyone help me wirh some cash. Thanks every one.

  16. Perhaps if humans weren’t out there “collecting” rare specimens, there would be fewer situations of a lone animal left without a mate to propagate the species.

  17. Arrows for my Bow | September 2, 2022 at 6:51 pm | Reply

    Hmmm…I wonder how scientists think any animal has survived at all without their help! I mean thats what nature does…survives, for thousands of years without any help, now since humans think they can “help”, those tortoises are down to maybe only 1! Way to ruin everything, people, just like usual!

  18. The best part of scientific discourse is the entertaining snark.

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